Publications

2012

Analyzing cancer samples with SNP arrays.

Van Loo P, Nilsen G, Nordgard SH, Vollan HK, Børresen-Dale AL, Kristensen VN, Lingjærde OC.
Methods Mol Biol. 2012;802:57-72.

PMID: 22130873

2011

Gene expression profiles of breast biopsies from healthy women identify a group with claudin-low features.

Haakensen VD, Lingjaerde OC, Lüders T, Riis M, Prat A, Troester MA, Holmen MM, Frantzen JO, Romundstad L, Navjord D, Bukholm IK, Johannesen TB, Perou CM, Ursin G, Kristensen VN, Børresen-Dale AL, Helland A.
BMC Med Genomics. 2011 Nov 1;4:77.

PMID: 22044755

High-resolution analyses of copy number changes in disseminated tumor cells of patients with breast cancer.

Mathiesen RR, Fjelldal R, Liestøl K, Due EU, Geigl JB, Riethdorf S, Borgen E, Rye IH, Schneider IJ, Obenauf AC, Mauermann O, Nilsen G, Christian Lingjaerde O, Børresen-Dale AL, Pantel K, Speicher MR, Naume B, Baumbusch LO.
Int J Cancer. 2011 Sep 20. doi: 10.1002/ijc.26444. [Epub ahead of print]

PMID: 21935921

Ischemia caused by time to freezing induces systematic microRNA and mRNA responses in cancer tissue.

Borgan E, Navon R, Vollan HK, Schlichting E, Sauer T, Yakhini Z, Lingjærde OC, Sørlie T, Børresen-Dale AL.
Mol Oncol. 2011 Dec;5(6):564-76.

PMID: 21917534

The differential disease regulome.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Drabløs F, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.
BMC Genomics. 2011 Jul 7;12:353.

PMID: 21736759

Cargo-Dependent Degradation of ESCRT-I as a Feedback Mechanism to Modulate Endosomal Sorting.

Malerød L, Pedersen NM, Sem Wegner CE, Hélène Lobert V, Leithe E, Brech A, Rivedal E, Liestøl K, Stenmark H.
Traffic. 2011 Sep;12(9):1211-26.

PMID: 21564451

Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer.

Solvang HK, Lingjærde OC, Frigessi A, Børresen-Dale AL, Kristensen VN.
BMC Bioinformatics. 2011 May 24;12:197.

PMID: 21609452

Combining gene signatures improves prediction of breast cancer survival.

Zhao X, Rødland EA, Sørlie T, Naume B, Langerød A, Frigessi A, Kristensen VN, Børresen-Dale AL, Lingjærde OC.
PLoS One. 2011 Mar 10;6(3):e17845.

PMID: 21423775

High dose chemotherapy with autologous stem cell support for patients with histologically transformed B-cell non-Hodgkin lymphomas. A Norwegian multi centre phase II study.

Eide MB, Lauritzsen GF, Kvalheim G, Kolstad A, Fagerli UM, Maisenhölder M, Østenstad B, Fluge Ø, Delabie J, Aarset H, Liestøl K, Holte H.
Br J Haematol. 152(5):600-10. doi: 10.1111/j.1365-2141.2010.08519.x. Epub 2011 Jan 17.

PMID: 21241276

2010

The Genomic HyperBrowser: inferential genomics at the sequence level.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.
Genome Biol. 2010 Dec 23;11(12):R121. [Epub ahead of print]

PMID: 21182759

Merging transcriptomics and metabolomics – advances in breast cancer profiling.

Borgan E, Sitter B, Lingjærde OC, Johnsen H, Lundgren S, Bathen TF, Sørlie T, Børresen-Dale AL, Gribbestad IS.
BMC Cancer. 2010 Nov 16;10:628.

PMID: 21080935

Allele-specific copy number analysis of tumors.

Van Loo P, Nordgard SH, Lingjærde OC, Russnes HG, Rye IH, Sun W, Weigman VJ, Marynen P, Zetterberg A, Naume B, Perou CM, Børresen-Dale AL, Kristensen VN.
Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16910-5.

PMID: 20837533

Impact of DNA physical properties on local sequence bias of human mutation.

Nakken S, Rødland EA, Hovig E.
Hum Mutat. 2010 Dec;31(12):1316-25.

PMID: 20886615

A phosphatidylinositol 3-kinase class III sub-complex containing VPS15, VPS34, Beclin 1, UVRAG and BIF-1 regulates cytokinesis and degradative endocytic traffic.

Thoresen SB, Pedersen NM, Liestøl K, Stenmark H.
Exp Cell Res. 2010 Dec 10;316(20):3368-78. Epub 2010 Jul 17.

PMID: 20643123

The importance of gene-centring microarray data.

Sørlie T, Borgan E, Myhre S, Vollan HK, Russnes H, Zhao X, Nilsen G, Lingjaerde OC, Børresen-Dale AL, Rødland E.
Lancet Oncol. 2010 Aug;11(8):719-20; author reply 720-1.

PMID: 20688275

Expression levels of uridine 5′-diphospho-glucuronosyltransferase genes in breast tissue from healthy women are associated with mammographic density.

Haakensen VD, Biong M, Lingjærde OC, Holmen MM, Frantzen JO, Chen Y, Navjord D, Romundstad L, Lüders T, Bukholm IK, Solvang HK, Kristensen VN, Ursin G, Børresen-Dale AL, Helland A.
Breast Cancer Res. 2010;12(4):R65. Epub 2010 Aug 27.

PMID: 20799965

Genomic alterations reveal potential for higher grade transformation in follicular lymphoma and confirm parallel evolution of tumor cell clones.

Eide MB, Liestol K, Lingjaerde OC, Hystad ME, Kresse SH, Meza-Zepeda L, Myklebost O, Trøen G, Aamot HV, Holte H, Smeland EB, Delabie J.
Blood. 2010 Sep 2;116(9):1489-97.

PMID: 20505157

Genomic architecture characterizes tumor progression paths and fate in breast cancer patients.

Russnes HG, Vollan HK, Lingjaerde OC, Krasnitz A, Lundin P, Naume B, Sørlie T, Borgen E, Rye IH, Langerød A, Chin SF, Teschendorff AE, Stephens PJ, Månér S, Schlichting E, Baumbusch LO, Kåresen R, Stratton MP, Wigler M, Caldas C, Zetterberg A, Hicks J, Børresen-Dale AL.
Sci Transl Med. 2010 Jun 30;2(38):38ra47.

PMID: 20592421

Cindr interacts with anillin to control cytokinesis in Drosophila melanogaster.

Haglund K, Nezis IP, Lemus D, Grabbe C, Wesche J, Liestøl K, Dikic I, Palmer R, Stenmark H.
Curr Biol. 2010 May 25;20(10):944-50. Epub 2010 May 6.

PMID: 20451383

PtdIns(3)P controls cytokinesis through KIF13A-mediated recruitment of FYVE-CENT to the midbody.

Sagona AP, Nezis IP, Pedersen NM, Liestøl K, Poulton J, Rusten TE, Skotheim RI, Raiborg C, Stenmark H.
Nat Cell Biol. 2010 Apr;12(4):362-71. Epub 2010 Mar 7.

PMID: 20208530

Glycan gene expression signatures in normal and malignant breast tissue; possible role in diagnosis and progression.

Potapenko IO, Haakensen VD, Lüders T, Helland A, Bukholm I, Sørlie T, Kristensen VN, Lingjaerde OC, Børresen-Dale AL.
Mol Oncol. 2010 Apr;4(2):98-118.

PMID: 20060370

Unstable DNA repair genes shaped by their own sequence modifying phenotypes.

Falster DS, Nakken S, Bergem-Ohr M, Rødland EA, Breivik J.
J Mol Evol. 2010 Mar;70(3):266-74.

PMID: 20213140

2009

Identification of p53 as a strong predictor of survival for patients with malignant peripheral nerve sheath tumors.

Brekke HR, Kolberg M, Skotheim RI, Hall KS, Bjerkehagen B, Risberg B, Domanski HA, Mandahl N, Liestøl K, Smeland S, Danielsen HE, Mertens F, Lothe RA.
Neuro Oncol. 2009 Oct;11(5):514-28. Epub 2009 Jan 30.

PMID: 19182148

Predicting helix-helix interactions from residue contacts in membrane proteins.

Lo A, Chiu YY, Rodland EA, Lyu PC, Sung TY, Hsu WL.
Bioinformatics 2009, Apr 15, 25; 996-1003. Epub 2009 Feb 25.

PMID: 19244388

Large-scale inference of the point mutational spectrum in human segmental duplications.

Nakken S, Rodland EA, Rognes T, Hovig, E.
BMC Genomics. 2009 Jan 22;10:43.

PMID: 19161616

2008

Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors.

Baumbusch LO, Aarøe J, Johansen FE, Hicks J, Sun H, Bruhn L, Gunderson K, Naume B, Kristensen VN, Liestøl K, Børresen-Dale AL, Lingjaerde OC.
BMC Genomics. 2008 Aug 8;9:379.

PMID: 18691401

Pathway based analysis of SNPs with relevance to 5-FU therapy: relation to intratumoral mRNA expression and survival.

Nordgard SH, Alnaes GI, Hihn B, Lingjaerde OC, Liestøl K, Tsalenko A, Sørlie T, Lønning PE, Børresen-Dale AL, Kristensen VN.
Int J Cancer. 2008 Aug 1;123(3):577-85.

PMID: 18498133

2007

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